Carnation DB

Dca34281.1

Annotation

13-exons
f-1
sp|D7TI88_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_08s0007g07150#GO:0005634;GO:0003676#1F0P1C
AT3G11960.1 | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:3786431-3793160 FORWARD LENGTH=1379
Repeat List (scaffold3529)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34281.1	1	166	1244	8.52	166	64	3e-53
Target_name	Start	End	Length	Cov(%)
sp\|D7TI88_VITVI	1	153	1363	11.22

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34281.1	1	166	1244	8.11	166	61	2e-45
Target_name	Start	End	Length	Cov(%)
AT3G11960.1	1	165	1379	11.96

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3529	Augus-PASA	mRNA	5964	20554	.	-	.	ID=Dca34281.1;Parent=Dca34281
scaffold3529	Augus-PASA	exon	5964	6158	.	-	.	ID=Dca34281.1.exon1;Parent=Dca34281.1
scaffold3529	Augus-PASA	exon	7117	7225	.	-	.	ID=Dca34281.1.exon2;Parent=Dca34281.1
scaffold3529	Augustus	exon	8146	8276	.	-	.	ID=Dca34281.1.exon3;Parent=Dca34281.1
scaffold3529	Augustus	exon	9691	9767	.	-	.	ID=Dca34281.1.exon4;Parent=Dca34281.1
scaffold3529	Augus-PASA	exon	9990	10131	.	-	.	ID=Dca34281.1.exon5;Parent=Dca34281.1
scaffold3529	Augus-PASA	exon	10258	10413	.	-	.	ID=Dca34281.1.exon6;Parent=Dca34281.1
scaffold3529	Augustus	exon	10502	10649	.	-	.	ID=Dca34281.1.exon7;Parent=Dca34281.1
scaffold3529	Augustus	exon	11780	12090	.	-	.	ID=Dca34281.1.exon8;Parent=Dca34281.1
scaffold3529	Augustus	exon	13778	15743	.	-	.	ID=Dca34281.1.exon9;Parent=Dca34281.1
scaffold3529	Augustus	exon	18092	18175	.	-	.	ID=Dca34281.1.exon10;Parent=Dca34281.1
scaffold3529	Augustus	exon	18761	18840	.	-	.	ID=Dca34281.1.exon11;Parent=Dca34281.1
scaffold3529	Augustus	exon	18923	19057	.	-	.	ID=Dca34281.1.exon12;Parent=Dca34281.1
scaffold3529	Augustus	exon	20354	20554	.	-	.	ID=Dca34281.1.exon13;Parent=Dca34281.1