Carnation DB

Dca34401.1

Annotation

8-exons
f-1
sp|B9ICU4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_902025#GO:0005524;GO:0019201;GO:0016776#3F0P0C
AT4G25280.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12939068-12940723 REVERSE LENGTH=249
Repeat List (scaffold3548)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34401.1	1	218	224	62.94	218	63	1e-75
Target_name	Start	End	Length	Cov(%)
sp\|B9ICU4_POPTR	1	225	235	95.74

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34401.1	38	222	224	54.91	185	67	6e-73
Target_name	Start	End	Length	Cov(%)
AT4G25280.1	44	228	249	74.29

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3548	Augus-PASA	mRNA	16517	19936	.	-	.	ID=Dca34401.1;Parent=Dca34401
scaffold3548	Augus-PASA	exon	16517	16531	.	-	.	ID=Dca34401.1.exon1;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	16707	16772	.	-	.	ID=Dca34401.1.exon2;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	16936	17043	.	-	.	ID=Dca34401.1.exon3;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	17184	17264	.	-	.	ID=Dca34401.1.exon4;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	17437	17593	.	-	.	ID=Dca34401.1.exon5;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	17686	17803	.	-	.	ID=Dca34401.1.exon6;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	17881	17935	.	-	.	ID=Dca34401.1.exon7;Parent=Dca34401.1
scaffold3548	Augus-PASA	exon	19862	19936	.	-	.	ID=Dca34401.1.exon8;Parent=Dca34401.1