Carnation DB

Dca35405.1

Annotation

5-exons
f-1
sp|D7SRA6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0072g00860#GO:0005488#1F0P0C
sp|B9SLH4_RICCO#Tetratricopeptide repeat protein, tpr, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0686810#GO:0005488#1F0P0C
Repeat List (scaffold368)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35405.1	43	268	269	69.51	226	83	2e-100
Target_name	Start	End	Length	Cov(%)
sp\|D7SRA6_VITVI	101	325	325	69.23

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35405.1	2	268	269	66.91	267	67	3e-89
Target_name	Start	End	Length	Cov(%)
AT1G22700.1	33	301	301	89.36

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold368	Augus-PASA	mRNA	64105	65942	.	-	.	ID=Dca35405.1;Parent=Dca35405
scaffold368	Augus-PASA	exon	64105	64395	.	-	.	ID=Dca35405.1.exon1;Parent=Dca35405.1
scaffold368	Augus-PASA	exon	65034	65180	.	-	.	ID=Dca35405.1.exon2;Parent=Dca35405.1
scaffold368	Augus-PASA	exon	65269	65558	.	-	.	ID=Dca35405.1.exon3;Parent=Dca35405.1
scaffold368	Augus-PASA	exon	65633	65688	.	-	.	ID=Dca35405.1.exon4;Parent=Dca35405.1
scaffold368	Augus-PASA	exon	65917	65942	.	-	.	ID=Dca35405.1.exon5;Parent=Dca35405.1
scaffold368	Augus-PASA	mRNA	64105	66123	.	-	.	ID=Dca35405.2;Parent=Dca35405
scaffold368	Augus-PASA	exon	64105	64395	.	-	.	ID=Dca35405.2.exon1;Parent=Dca35405.2
scaffold368	Augus-PASA	exon	65034	65180	.	-	.	ID=Dca35405.2.exon2;Parent=Dca35405.2
scaffold368	Augus-PASA	exon	65269	65558	.	-	.	ID=Dca35405.2.exon3;Parent=Dca35405.2
scaffold368	Augustus	exon	65633	65684	.	-	.	ID=Dca35405.2.exon4;Parent=Dca35405.2
scaffold368	Augus-PASA	exon	65917	66123	.	-	.	ID=Dca35405.2.exon5;Parent=Dca35405.2