Dca35451.1
Annotation
- 2-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3684)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca35451.1 |
34 |
549 |
549 |
34.79 |
516 |
37 |
8e-90
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
86 |
569 |
1248 |
38.78 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca35451.1 |
380 |
549 |
549 |
12.02 |
170 |
39 |
2e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
490 |
662 |
1428 |
12.11 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3684 |
Augustus |
mRNA |
10716 |
12598 |
. |
+ |
. |
ID=Dca35451.1;Parent=Dca35451 |
| scaffold3684 |
Augustus |
exon |
10716 |
11769 |
. |
+ |
. |
ID=Dca35451.1.exon1;Parent=Dca35451.1 |
| scaffold3684 |
Augustus |
exon |
12003 |
12598 |
. |
+ |
. |
ID=Dca35451.1.exon2;Parent=Dca35451.1 |
