Dca36021.1
Annotation
- 2-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold3778)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36021.1 |
94 |
356 |
380 |
40.26 |
263 |
59 |
1e-82
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
1058 |
1312 |
1597 |
15.96 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36021.1 |
139 |
356 |
380 |
23.94 |
218 |
41 |
4e-47
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
98 |
319 |
1262 |
17.59 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3778 |
Augustus |
mRNA |
5187 |
7239 |
. |
- |
. |
ID=Dca36021.1;Parent=Dca36021 |
| scaffold3778 |
Augustus |
exon |
5187 |
6178 |
. |
- |
. |
ID=Dca36021.1.exon1;Parent=Dca36021.1 |
| scaffold3778 |
Augustus |
exon |
7089 |
7239 |
. |
- |
. |
ID=Dca36021.1.exon2;Parent=Dca36021.1 |
