Dca36112.1
Annotation
- 2-exons
- f-1
- sp|Q2R307_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g34050#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- Repeat List (scaffold379)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36112.1 |
7 |
173 |
215 |
46.51 |
167 |
47 |
2e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R307_ORYSJ |
474 |
688 |
927 |
23.19 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36112.1 |
108 |
168 |
215 |
15.81 |
61 |
56 |
5e-16
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os09t0375700-01 |
2 |
62 |
73 |
83.56 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold379 |
Augustus |
mRNA |
6679 |
7650 |
. |
+ |
. |
ID=Dca36112.1;Parent=Dca36112 |
| scaffold379 |
Augustus |
exon |
6679 |
6897 |
. |
+ |
. |
ID=Dca36112.1.exon1;Parent=Dca36112.1 |
| scaffold379 |
Augustus |
exon |
7222 |
7650 |
. |
+ |
. |
ID=Dca36112.1.exon2;Parent=Dca36112.1 |
