Dca36221.1
Annotation
- 4-exons
- f-1
- sp|B9I896_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_729763#unknown#0F0P0C
- AT3G04950.1 | Symbols: | CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | chr3:1371786-1373300 FORWARD LENGTH=231
- Repeat List (scaffold38)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36221.1 |
6 |
150 |
151 |
65.56 |
145 |
68 |
4e-56
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9I896_POPTR |
76 |
222 |
222 |
66.21 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36221.1 |
6 |
150 |
151 |
63.57 |
145 |
66 |
1e-56
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G04950.1 |
85 |
231 |
231 |
63.63 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold38 |
Augustus |
mRNA |
394466 |
396471 |
. |
+ |
. |
ID=Dca36221.1;Parent=Dca36221 |
| scaffold38 |
Augustus |
exon |
394466 |
394621 |
. |
+ |
. |
ID=Dca36221.1.exon1;Parent=Dca36221.1 |
| scaffold38 |
Augustus |
exon |
394992 |
395153 |
. |
+ |
. |
ID=Dca36221.1.exon2;Parent=Dca36221.1 |
| scaffold38 |
Augustus |
exon |
395840 |
395955 |
. |
+ |
. |
ID=Dca36221.1.exon3;Parent=Dca36221.1 |
| scaffold38 |
Augustus |
exon |
396450 |
396471 |
. |
+ |
. |
ID=Dca36221.1.exon4;Parent=Dca36221.1 |
