Dca36489.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3837)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36489.1 |
11 |
451 |
503 |
37.37 |
441 |
40 |
2e-83
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
85 |
534 |
1050 |
42.85 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36489.1 |
265 |
448 |
503 |
14.31 |
184 |
38 |
2e-33
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
610 |
801 |
1428 |
13.44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3837 |
Augustus |
mRNA |
13319 |
15246 |
. |
+ |
. |
ID=Dca36489.1;Parent=Dca36489 |
| scaffold3837 |
Augustus |
exon |
13319 |
14108 |
. |
+ |
. |
ID=Dca36489.1.exon1;Parent=Dca36489.1 |
| scaffold3837 |
Augustus |
exon |
14525 |
15246 |
. |
+ |
. |
ID=Dca36489.1.exon2;Parent=Dca36489.1 |
