Carnation DB

Dca3737.1

Annotation

6-exons
f-1
sp|B9GI53_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_706765#unknown#0F0P0C
Os05t0543300-01 WD40 repeat, region domain containing protein.
Repeat List (scaffold1134)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3737.1	8	218	230	78.26	211	86	4e-107
Target_name	Start	End	Length	Cov(%)
sp\|B9GI53_POPTR	119	329	329	64.13

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3737.1	8	206	230	73.04	199	85	5e-101
Target_name	Start	End	Length	Cov(%)
Os05t0543300-01	117	315	321	61.99

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1134	Augustus	mRNA	55680	59055	.	+	.	ID=Dca3737.1;Parent=Dca3737
scaffold1134	Augustus	exon	55680	55802	.	+	.	ID=Dca3737.1.exon1;Parent=Dca3737.1
scaffold1134	Augustus	exon	56833	56949	.	+	.	ID=Dca3737.1.exon2;Parent=Dca3737.1
scaffold1134	Augus-PASA	exon	57204	57341	.	+	.	ID=Dca3737.1.exon3;Parent=Dca3737.1
scaffold1134	Augus-PASA	exon	57479	57560	.	+	.	ID=Dca3737.1.exon4;Parent=Dca3737.1
scaffold1134	Augus-PASA	exon	57682	57731	.	+	.	ID=Dca3737.1.exon5;Parent=Dca3737.1
scaffold1134	Augus-PASA	exon	58873	59055	.	+	.	ID=Dca3737.1.exon6;Parent=Dca3737.1