Dca38376.1
Annotation
- 2-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold4104)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38376.1 |
102 |
288 |
312 |
36.85 |
187 |
48 |
1e-58
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
170 |
409 |
932 |
25.75 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38376.1 |
137 |
285 |
312 |
16.98 |
149 |
33 |
1e-19
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
642 |
801 |
1428 |
11.2 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4104 |
Augustus |
mRNA |
1 |
1331 |
. |
- |
. |
ID=Dca38376.1;Parent=Dca38376 |
| scaffold4104 |
Augustus |
exon |
1 |
487 |
. |
- |
. |
ID=Dca38376.1.exon1;Parent=Dca38376.1 |
| scaffold4104 |
Augustus |
exon |
881 |
1331 |
. |
- |
. |
ID=Dca38376.1.exon2;Parent=Dca38376.1 |
