Dca38873.1
Annotation
- 4-exons
- f-1
- sp|C5NNX7_ORYSI#Putative retrotransposon protein#Oryza sativa subsp indica (Rice)#Name=K0185A05-9#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold4189)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38873.1 |
1 |
336 |
346 |
52.02 |
336 |
48 |
3e-101
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|C5NNX7_ORYSI |
555 |
935 |
937 |
40.66 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38873.1 |
152 |
326 |
346 |
24.27 |
175 |
39 |
3e-42
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0627900-01 |
8 |
226 |
230 |
95.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4189 |
Augustus |
mRNA |
13684 |
15647 |
. |
- |
. |
ID=Dca38873.1;Parent=Dca38873 |
| scaffold4189 |
Augustus |
exon |
13684 |
13739 |
. |
- |
. |
ID=Dca38873.1.exon1;Parent=Dca38873.1 |
| scaffold4189 |
Augustus |
exon |
14440 |
14570 |
. |
- |
. |
ID=Dca38873.1.exon2;Parent=Dca38873.1 |
| scaffold4189 |
Augustus |
exon |
14702 |
15197 |
. |
- |
. |
ID=Dca38873.1.exon3;Parent=Dca38873.1 |
| scaffold4189 |
Augustus |
exon |
15290 |
15647 |
. |
- |
. |
ID=Dca38873.1.exon4;Parent=Dca38873.1 |
