Carnation DB

Dca38941.1

Annotation

6-exons
f-1
sp|Q2RB45_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g03250#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
Repeat List (scaffold4199)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38941.1	162	283	303	25.74	122	64	4e-38
Target_name	Start	End	Length	Cov(%)
sp\|Q2RB45_ORYSJ	667	780	1284	8.87

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38941.1	182	283	303	14.52	102	44	5e-23
Target_name	Start	End	Length	Cov(%)
Os12t0142900-02	386	487	707	14.42

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4199	Augustus	mRNA	12626	16146	.	-	.	ID=Dca38941.1;Parent=Dca38941
scaffold4199	Augustus	exon	12626	12994	.	-	.	ID=Dca38941.1.exon1;Parent=Dca38941.1
scaffold4199	Augustus	exon	13403	13662	.	-	.	ID=Dca38941.1.exon2;Parent=Dca38941.1
scaffold4199	Augustus	exon	14452	14520	.	-	.	ID=Dca38941.1.exon3;Parent=Dca38941.1
scaffold4199	Augustus	exon	15418	15467	.	-	.	ID=Dca38941.1.exon4;Parent=Dca38941.1
scaffold4199	Augustus	exon	15703	15770	.	-	.	ID=Dca38941.1.exon5;Parent=Dca38941.1
scaffold4199	Augustus	exon	16051	16146	.	-	.	ID=Dca38941.1.exon6;Parent=Dca38941.1