Carnation DB

Dca38945.1

Annotation

18-exons
f-1
sp|G7JA73_MEDTR#Small subunit processome component-like protein#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_3g083970#GO:0005488#1F0P0C
Repeat List (scaffold42)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38945.1	1329	1796	1798	12.34	468	45	4e-114
Target_name	Start	End	Length	Cov(%)
sp\|G7JA73_MEDTR	2236	2731	2733	18.14

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38945.1	1328	1796	1798	10.84	469	39	2e-96
Target_name	Start	End	Length	Cov(%)
AT4G30990.2	2120	2617	2620	19

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold42	Augustus	mRNA	11671	21893	.	+	.	ID=Dca38945.1;Parent=Dca38945
scaffold42	Augustus	exon	11671	11910	.	+	.	ID=Dca38945.1.exon1;Parent=Dca38945.1
scaffold42	Augustus	exon	12067	12421	.	+	.	ID=Dca38945.1.exon2;Parent=Dca38945.1
scaffold42	Augustus	exon	12723	12900	.	+	.	ID=Dca38945.1.exon3;Parent=Dca38945.1
scaffold42	Augustus	exon	12996	13073	.	+	.	ID=Dca38945.1.exon4;Parent=Dca38945.1
scaffold42	Augustus	exon	13237	13498	.	+	.	ID=Dca38945.1.exon5;Parent=Dca38945.1
scaffold42	Augustus	exon	13616	14065	.	+	.	ID=Dca38945.1.exon6;Parent=Dca38945.1
scaffold42	Augustus	exon	14582	15045	.	+	.	ID=Dca38945.1.exon7;Parent=Dca38945.1
scaffold42	Augustus	exon	15876	16068	.	+	.	ID=Dca38945.1.exon8;Parent=Dca38945.1
scaffold42	Augustus	exon	16191	16556	.	+	.	ID=Dca38945.1.exon9;Parent=Dca38945.1
scaffold42	Augustus	exon	16731	16856	.	+	.	ID=Dca38945.1.exon10;Parent=Dca38945.1
scaffold42	Augustus	exon	17389	17454	.	+	.	ID=Dca38945.1.exon11;Parent=Dca38945.1
scaffold42	Augustus	exon	17562	18645	.	+	.	ID=Dca38945.1.exon12;Parent=Dca38945.1
scaffold42	Augustus	exon	18742	18862	.	+	.	ID=Dca38945.1.exon13;Parent=Dca38945.1
scaffold42	Augustus	exon	19433	19712	.	+	.	ID=Dca38945.1.exon14;Parent=Dca38945.1
scaffold42	Augustus	exon	20025	20258	.	+	.	ID=Dca38945.1.exon15;Parent=Dca38945.1
scaffold42	Augustus	exon	20551	21060	.	+	.	ID=Dca38945.1.exon16;Parent=Dca38945.1
scaffold42	Augustus	exon	21218	21350	.	+	.	ID=Dca38945.1.exon17;Parent=Dca38945.1
scaffold42	Augustus	exon	21637	21893	.	+	.	ID=Dca38945.1.exon18;Parent=Dca38945.1