Dca39.1
Annotation
- 6-exons
- f-1
- sp|D7UCQ1_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_15s0046g00900#unknown#0F0P0C
- AT5G36000.1 | Symbols: | BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14139996-14141892 FORWARD LENGTH=355
- Repeat List (scaffold1)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39.1 |
1 |
261 |
261 |
55.93 |
261 |
56 |
1e-83
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D7UCQ1_VITVI |
41 |
295 |
295 |
86.44 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39.1 |
1 |
261 |
261 |
52.87 |
261 |
53 |
4e-78
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G36000.1 |
101 |
355 |
355 |
71.83 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1 |
Augustus |
mRNA |
415461 |
417107 |
. |
+ |
. |
ID=Dca39.1;Parent=Dca39 |
| scaffold1 |
Augustus |
exon |
415461 |
415649 |
. |
+ |
. |
ID=Dca39.1.exon1;Parent=Dca39.1 |
| scaffold1 |
Augustus |
exon |
415934 |
416120 |
. |
+ |
. |
ID=Dca39.1.exon2;Parent=Dca39.1 |
| scaffold1 |
Augustus |
exon |
416318 |
416365 |
. |
+ |
. |
ID=Dca39.1.exon3;Parent=Dca39.1 |
| scaffold1 |
Augustus |
exon |
416452 |
416622 |
. |
+ |
. |
ID=Dca39.1.exon4;Parent=Dca39.1 |
| scaffold1 |
Augustus |
exon |
416780 |
416887 |
. |
+ |
. |
ID=Dca39.1.exon5;Parent=Dca39.1 |
| scaffold1 |
Augustus |
exon |
417025 |
417107 |
. |
+ |
. |
ID=Dca39.1.exon6;Parent=Dca39.1 |
