Carnation DB

Dca39002.1

Annotation

7-exons
f-1
sp|G5DXB8_SILLA#Putative uncharacterized protein#Silene latifolia (White campion) (Bladder campion)#unknown#unknown#0F0P0C
AT3G15150.1 | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box superfamily protein | chr3:5102210-5104082 REVERSE LENGTH=249
Repeat List (scaffold42)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39002.1	3	185	256	55.85	183	79	9e-83
Target_name	Start	End	Length	Cov(%)
sp\|G5DXB8_SILLA	2	184	184	99.45

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39002.1	1	253	256	52.73	253	54	6e-73
Target_name	Start	End	Length	Cov(%)
AT3G15150.1	1	249	249	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold42	Augustus	mRNA	399072	401378	.	+	.	ID=Dca39002.1;Parent=Dca39002
scaffold42	Augustus	exon	399072	399170	.	+	.	ID=Dca39002.1.exon1;Parent=Dca39002.1
scaffold42	Augustus	exon	399296	399367	.	+	.	ID=Dca39002.1.exon2;Parent=Dca39002.1
scaffold42	Augustus	exon	400230	400340	.	+	.	ID=Dca39002.1.exon3;Parent=Dca39002.1
scaffold42	Augustus	exon	400449	400559	.	+	.	ID=Dca39002.1.exon4;Parent=Dca39002.1
scaffold42	Augustus	exon	400759	400898	.	+	.	ID=Dca39002.1.exon5;Parent=Dca39002.1
scaffold42	Augustus	exon	401041	401126	.	+	.	ID=Dca39002.1.exon6;Parent=Dca39002.1
scaffold42	Augustus	exon	401227	401378	.	+	.	ID=Dca39002.1.exon7;Parent=Dca39002.1