Dca39016.1
Annotation
- 4-exons
- f-1
- sp|A5BNE0_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_027370#unknown#0F0P0C
- AT3G54290.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20104623-20105845 REVERSE LENGTH=350
- Repeat List (scaffold420)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39016.1 |
1 |
330 |
341 |
47.5 |
330 |
49 |
7e-88
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BNE0_VITVI |
1 |
322 |
327 |
98.47 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39016.1 |
36 |
330 |
341 |
40.46 |
295 |
47 |
3e-74
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G54290.1 |
57 |
344 |
350 |
82.28 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold420 |
Augustus |
mRNA |
108624 |
115902 |
. |
+ |
. |
ID=Dca39016.1;Parent=Dca39016 |
| scaffold420 |
Augustus |
exon |
108624 |
109221 |
. |
+ |
. |
ID=Dca39016.1.exon1;Parent=Dca39016.1 |
| scaffold420 |
Augustus |
exon |
115099 |
115253 |
. |
+ |
. |
ID=Dca39016.1.exon2;Parent=Dca39016.1 |
| scaffold420 |
Augustus |
exon |
115530 |
115780 |
. |
+ |
. |
ID=Dca39016.1.exon3;Parent=Dca39016.1 |
| scaffold420 |
Augustus |
exon |
115881 |
115902 |
. |
+ |
. |
ID=Dca39016.1.exon4;Parent=Dca39016.1 |
