Carnation DB

Dca39197.1

Annotation

5-exons
f-1
sp|B9N361_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_784062#unknown#0F0P0C
Os01t0601675-01 Leucine-rich repeat, N-terminal domain containing protein.
Repeat List (scaffold423)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39197.1	827	1064	1065	9.38	238	40	1e-28
Target_name	Start	End	Length	Cov(%)
sp\|B9N361_POPTR	572	823	938	26.86

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39197.1	8	808	1065	29.2	801	33	5e-104
Target_name	Start	End	Length	Cov(%)
Os01t0601675-01	9	953	954	99.05

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold423	Augustus	mRNA	103167	107691	.	+	.	ID=Dca39197.1;Parent=Dca39197
scaffold423	Augustus	exon	103167	104562	.	+	.	ID=Dca39197.1.exon1;Parent=Dca39197.1
scaffold423	Augustus	exon	104697	105726	.	+	.	ID=Dca39197.1.exon2;Parent=Dca39197.1
scaffold423	Augustus	exon	106647	106798	.	+	.	ID=Dca39197.1.exon3;Parent=Dca39197.1
scaffold423	Augustus	exon	106887	106906	.	+	.	ID=Dca39197.1.exon4;Parent=Dca39197.1
scaffold423	Augustus	exon	107092	107691	.	+	.	ID=Dca39197.1.exon5;Parent=Dca39197.1