Carnation DB

Dca39284.1

Annotation

6-exons
f-1
sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold4245)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39284.1	30	250	817	13.7	221	40	8e-44
Target_name	Start	End	Length	Cov(%)
sp\|Q10IE2_ORYSJ	281	562	1248	22.59

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39284.1	144	250	817	5.5	107	43	4e-19
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	549	655	1428	7.49

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4245	Augustus	mRNA	313	10225	.	+	.	ID=Dca39284.1;Parent=Dca39284
scaffold4245	Augustus	exon	313	703	.	+	.	ID=Dca39284.1.exon1;Parent=Dca39284.1
scaffold4245	Augustus	exon	1152	1511	.	+	.	ID=Dca39284.1.exon2;Parent=Dca39284.1
scaffold4245	Augustus	exon	7978	8213	.	+	.	ID=Dca39284.1.exon3;Parent=Dca39284.1
scaffold4245	Augustus	exon	8296	9000	.	+	.	ID=Dca39284.1.exon4;Parent=Dca39284.1
scaffold4245	Augustus	exon	9175	9453	.	+	.	ID=Dca39284.1.exon5;Parent=Dca39284.1
scaffold4245	Augustus	exon	9743	10225	.	+	.	ID=Dca39284.1.exon6;Parent=Dca39284.1