Carnation DB

Dca39406.1

Annotation

6-exons
f-1
sp|F6GZU4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_18s0001g15090#GO:0005525;GO:0015031;GO:0007264#1F2P0C
AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1, RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395 FORWARD LENGTH=212
Repeat List (scaffold427)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39406.1	7	210	210	85.71	204	89	2e-105
Target_name	Start	End	Length	Cov(%)
sp\|F6GZU4_VITVI	34	237	237	86.07

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39406.1	9	201	210	80	193	88	1e-97
Target_name	Start	End	Length	Cov(%)
AT1G43890.1	8	200	212	91.03

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold427	Augustus	mRNA	67914	71140	.	+	.	ID=Dca39406.1;Parent=Dca39406
scaffold427	Augustus	exon	67914	68052	.	+	.	ID=Dca39406.1.exon1;Parent=Dca39406.1
scaffold427	Augus-PASA	exon	68582	68650	.	+	.	ID=Dca39406.1.exon2;Parent=Dca39406.1
scaffold427	Augus-PASA	exon	69895	69960	.	+	.	ID=Dca39406.1.exon3;Parent=Dca39406.1
scaffold427	Augus-PASA	exon	70315	70436	.	+	.	ID=Dca39406.1.exon4;Parent=Dca39406.1
scaffold427	Augus-PASA	exon	70812	70940	.	+	.	ID=Dca39406.1.exon5;Parent=Dca39406.1
scaffold427	Augus-PASA	exon	71033	71140	.	+	.	ID=Dca39406.1.exon6;Parent=Dca39406.1