Dca395.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold10045)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca395.1 |
1 |
122 |
131 |
67.17 |
122 |
61 |
3e-45
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
836 |
981 |
1050 |
13.9 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca395.1 |
7 |
86 |
131 |
25.19 |
80 |
41 |
2e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1216 |
1296 |
1428 |
5.67 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold10045 |
Augustus |
mRNA |
198 |
3276 |
. |
+ |
. |
ID=Dca395.1;Parent=Dca395 |
| scaffold10045 |
Augustus |
exon |
198 |
453 |
. |
+ |
. |
ID=Dca395.1.exon1;Parent=Dca395.1 |
| scaffold10045 |
Augustus |
exon |
525 |
663 |
. |
+ |
. |
ID=Dca395.1.exon2;Parent=Dca395.1 |
| scaffold10045 |
Augustus |
exon |
3021 |
3276 |
. |
+ |
. |
ID=Dca395.1.exon3;Parent=Dca395.1 |
