Carnation DB

Dca39603.1

Annotation

8-exons
f-1
sp|D7MJ37_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_916150#GO:0016021#0F0P1C
AT5G40780.1 | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446
Repeat List (scaffold43)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39603.1	5	444	444	78.6	440	80	0
Target_name	Start	End	Length	Cov(%)
sp\|D7MJ37_ARALL	10	445	445	97.97

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39603.1	14	444	444	77.25	431	80	0
Target_name	Start	End	Length	Cov(%)
AT5G40780.1	20	446	446	95.73

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold43	Augustus	mRNA	198647	201385	.	+	.	ID=Dca39603.1;Parent=Dca39603
scaffold43	Augustus	exon	198647	198664	.	+	.	ID=Dca39603.1.exon1;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	199394	199554	.	+	.	ID=Dca39603.1.exon2;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	199747	200142	.	+	.	ID=Dca39603.1.exon3;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	200242	200635	.	+	.	ID=Dca39603.1.exon4;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	200736	200841	.	+	.	ID=Dca39603.1.exon5;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	200927	201018	.	+	.	ID=Dca39603.1.exon6;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	201113	201181	.	+	.	ID=Dca39603.1.exon7;Parent=Dca39603.1
scaffold43	Augus-PASA	exon	201287	201385	.	+	.	ID=Dca39603.1.exon8;Parent=Dca39603.1