Dca3997.1
Annotation
- 2-exons
- f-1
- sp|Q53PJ3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g24270#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold1146)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3997.1 |
1 |
45 |
143 |
20.97 |
45 |
67 |
2e-10
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53PJ3_ORYSJ |
563 |
607 |
1506 |
2.98 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca3997.1 |
42 |
94 |
143 |
16.08 |
53 |
44 |
2e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
944 |
996 |
1539 |
3.44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1146 |
Augustus |
mRNA |
27184 |
28623 |
. |
+ |
. |
ID=Dca3997.1;Parent=Dca3997 |
| scaffold1146 |
Augustus |
exon |
27184 |
27319 |
. |
+ |
. |
ID=Dca3997.1.exon1;Parent=Dca3997.1 |
| scaffold1146 |
Augustus |
exon |
28328 |
28623 |
. |
+ |
. |
ID=Dca3997.1.exon2;Parent=Dca3997.1 |
