Carnation DB

Dca40061.1

Annotation

7-exons
f-1
sp|B9H9R6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_819577#unknown#0F0P0C
Os05t0574700-01 Similar to cDNA clone:002-182-C01, full insert sequence.
Repeat List (scaffold437)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40061.1	17	196	196	77.04	180	84	6e-86
Target_name	Start	End	Length	Cov(%)
sp\|B9H9R6_POPTR	23	200	200	89

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40061.1	12	196	196	74.48	185	79	6e-82
Target_name	Start	End	Length	Cov(%)
AT2G25605.1	15	200	200	93

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold437	Augus-PASA	mRNA	90375	92988	.	-	.	ID=Dca40061.1;Parent=Dca40061
scaffold437	Augus-PASA	exon	90375	90461	.	-	.	ID=Dca40061.1.exon1;Parent=Dca40061.1
scaffold437	Augus-PASA	exon	90927	91004	.	-	.	ID=Dca40061.1.exon2;Parent=Dca40061.1
scaffold437	Augus-PASA	exon	91115	91210	.	-	.	ID=Dca40061.1.exon3;Parent=Dca40061.1
scaffold437	Augus-PASA	exon	91300	91362	.	-	.	ID=Dca40061.1.exon4;Parent=Dca40061.1
scaffold437	Augus-PASA	exon	91449	91541	.	-	.	ID=Dca40061.1.exon5;Parent=Dca40061.1
scaffold437	Augus-PASA	exon	91626	91668	.	-	.	ID=Dca40061.1.exon6;Parent=Dca40061.1
scaffold437	Augus-PASA	exon	92858	92988	.	-	.	ID=Dca40061.1.exon7;Parent=Dca40061.1