Carnation DB

Dca40114.1

Annotation

5-exons
f-1
sp|D3IVU0_9POAL#Putative retrotransposon protein#Phyllostachys edulis#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold4379)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40114.1	34	217	927	6.25	184	32	2e-20
Target_name	Start	End	Length	Cov(%)
sp\|D3IVU0_9POAL	23	206	896	20.53

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40114.1	242	621	927	14.56	380	33	1e-56
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	981	1384	1401	28.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4379	Augustus	mRNA	45128	53523	.	-	.	ID=Dca40114.1;Parent=Dca40114
scaffold4379	Augustus	exon	45128	45801	.	-	.	ID=Dca40114.1.exon1;Parent=Dca40114.1
scaffold4379	Augustus	exon	47564	47769	.	-	.	ID=Dca40114.1.exon2;Parent=Dca40114.1
scaffold4379	Augustus	exon	48124	48475	.	-	.	ID=Dca40114.1.exon3;Parent=Dca40114.1
scaffold4379	Augustus	exon	48581	49399	.	-	.	ID=Dca40114.1.exon4;Parent=Dca40114.1
scaffold4379	Augustus	exon	52791	53523	.	-	.	ID=Dca40114.1.exon5;Parent=Dca40114.1