Carnation DB

Dca40118.1

Annotation

7-exons
f-1
sp|B9HYN1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_887384#GO:0005198#1F0P0C
sp|D7MET3_ARALL#Vesicle-associated membrane family protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_492738#GO:0005198#1F0P0C
Repeat List (scaffold438)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40118.1	79	287	287	54.7	209	74	7e-89
Target_name	Start	End	Length	Cov(%)
sp\|B9HYN1_POPTR	23	235	235	90.63

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40118.1	1	287	287	63.06	287	63	3e-85
Target_name	Start	End	Length	Cov(%)
AT5G54110.1	1	265	266	99.62

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold438	Augus-PASA	mRNA	63430	67358	.	+	.	ID=Dca40118.1;Parent=Dca40118
scaffold438	Augus-PASA	exon	63430	63763	.	+	.	ID=Dca40118.1.exon1;Parent=Dca40118.1
scaffold438	Augus-PASA	exon	64501	64571	.	+	.	ID=Dca40118.1.exon2;Parent=Dca40118.1
scaffold438	Augus-PASA	exon	64690	64771	.	+	.	ID=Dca40118.1.exon3;Parent=Dca40118.1
scaffold438	Augus-PASA	exon	64866	64984	.	+	.	ID=Dca40118.1.exon4;Parent=Dca40118.1
scaffold438	Augus-PASA	exon	66896	66973	.	+	.	ID=Dca40118.1.exon5;Parent=Dca40118.1
scaffold438	Augus-PASA	exon	67063	67182	.	+	.	ID=Dca40118.1.exon6;Parent=Dca40118.1
scaffold438	Augus-PASA	exon	67299	67358	.	+	.	ID=Dca40118.1.exon7;Parent=Dca40118.1