Carnation DB

Dca40217.1

Annotation

20-exons
f-1
sp|F6HUX6_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_14s0066g00880#GO:0005524;GO:0008026;GO:0003676#3F0P0C
sp|B9SF96_RICCO#Pentatricopeptide repeat-containing protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1095670#GO:0005524;GO:0008026;GO:0003676#3F0P0C
Repeat List (scaffold44)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40217.1	622	912	1088	12.77	291	46	1e-60
Target_name	Start	End	Length	Cov(%)
sp\|F6HUX6_VITVI	710	985	1275	21.64

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40217.1	622	1088	1088	16.08	467	37	2e-54
Target_name	Start	End	Length	Cov(%)
AT3G27730.1	707	1133	1133	37.68

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold44	Augustus	mRNA	71340	81268	.	+	.	ID=Dca40217.1;Parent=Dca40217
scaffold44	Augustus	exon	71340	71407	.	+	.	ID=Dca40217.1.exon1;Parent=Dca40217.1
scaffold44	Augustus	exon	71921	72104	.	+	.	ID=Dca40217.1.exon2;Parent=Dca40217.1
scaffold44	Augustus	exon	72349	72510	.	+	.	ID=Dca40217.1.exon3;Parent=Dca40217.1
scaffold44	Augustus	exon	72599	72836	.	+	.	ID=Dca40217.1.exon4;Parent=Dca40217.1
scaffold44	Augustus	exon	72928	72964	.	+	.	ID=Dca40217.1.exon5;Parent=Dca40217.1
scaffold44	Augustus	exon	73054	73100	.	+	.	ID=Dca40217.1.exon6;Parent=Dca40217.1
scaffold44	Augustus	exon	73256	73293	.	+	.	ID=Dca40217.1.exon7;Parent=Dca40217.1
scaffold44	Augustus	exon	73540	73783	.	+	.	ID=Dca40217.1.exon8;Parent=Dca40217.1
scaffold44	Augustus	exon	75737	75820	.	+	.	ID=Dca40217.1.exon9;Parent=Dca40217.1
scaffold44	Augustus	exon	75966	76091	.	+	.	ID=Dca40217.1.exon10;Parent=Dca40217.1
scaffold44	Augustus	exon	76171	76367	.	+	.	ID=Dca40217.1.exon11;Parent=Dca40217.1
scaffold44	Augustus	exon	76444	76632	.	+	.	ID=Dca40217.1.exon12;Parent=Dca40217.1
scaffold44	Augustus	exon	76871	77119	.	+	.	ID=Dca40217.1.exon13;Parent=Dca40217.1
scaffold44	Augustus	exon	78073	78321	.	+	.	ID=Dca40217.1.exon14;Parent=Dca40217.1
scaffold44	Augustus	exon	78408	78457	.	+	.	ID=Dca40217.1.exon15;Parent=Dca40217.1
scaffold44	Augustus	exon	79472	79554	.	+	.	ID=Dca40217.1.exon16;Parent=Dca40217.1
scaffold44	Augustus	exon	79715	79991	.	+	.	ID=Dca40217.1.exon17;Parent=Dca40217.1
scaffold44	Augustus	exon	80123	80157	.	+	.	ID=Dca40217.1.exon18;Parent=Dca40217.1
scaffold44	Augustus	exon	80256	80543	.	+	.	ID=Dca40217.1.exon19;Parent=Dca40217.1
scaffold44	Augustus	exon	80847	81268	.	+	.	ID=Dca40217.1.exon20;Parent=Dca40217.1