Carnation DB

Dca4079.1

Annotation

5-exons
f-1
sp|B9SME8_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1073680#unknown#0F0P0C
Os06t0642900-01 Ubiquitin system component Cue domain containing protein.
Repeat List (scaffold115)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4079.1	2	206	206	59.22	205	57	2e-63
Target_name	Start	End	Length	Cov(%)
sp\|B9SME8_RICCO	68	282	282	76.24

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4079.1	2	206	206	53.39	205	51	2e-55
Target_name	Start	End	Length	Cov(%)
Os06t0642900-01	61	275	276	77.89

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold115	Augustus	mRNA	212541	213869	.	+	.	ID=Dca4079.1;Parent=Dca4079
scaffold115	Augustus	exon	212541	212546	.	+	.	ID=Dca4079.1.exon1;Parent=Dca4079.1
scaffold115	Augustus	exon	212842	212971	.	+	.	ID=Dca4079.1.exon2;Parent=Dca4079.1
scaffold115	Augustus	exon	213066	213289	.	+	.	ID=Dca4079.1.exon3;Parent=Dca4079.1
scaffold115	Augustus	exon	213418	213591	.	+	.	ID=Dca4079.1.exon4;Parent=Dca4079.1
scaffold115	Augustus	exon	213783	213869	.	+	.	ID=Dca4079.1.exon5;Parent=Dca4079.1