Dca4100.1
Annotation
- 3-exons
- f-1
- sp|A2I5E5_BETVU#Retrotransposon protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold11502)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4100.1 |
26 |
680 |
696 |
53.01 |
655 |
51 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A2I5E5_BETVU |
226 |
926 |
1501 |
46.7 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4100.1 |
127 |
667 |
696 |
27.15 |
541 |
32 |
2e-88
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
11 |
602 |
707 |
83.73 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold11502 |
Augustus |
mRNA |
1 |
2303 |
. |
+ |
. |
ID=Dca4100.1;Parent=Dca4100 |
| scaffold11502 |
Augustus |
exon |
1 |
571 |
. |
+ |
. |
ID=Dca4100.1.exon1;Parent=Dca4100.1 |
| scaffold11502 |
Augustus |
exon |
661 |
1514 |
. |
+ |
. |
ID=Dca4100.1.exon2;Parent=Dca4100.1 |
| scaffold11502 |
Augustus |
exon |
1638 |
2303 |
. |
+ |
. |
ID=Dca4100.1.exon3;Parent=Dca4100.1 |
