Dca42287.1
Annotation
- 3-exons
- f-1
- sp|E0CS68_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_19s0014g00970#unknown#0F0P0C
- AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). | chr1:19954558-19956509 REVERSE LENGTH=314
- Repeat List (scaffold4740)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42287.1 |
45 |
320 |
325 |
39.07 |
276 |
43 |
1e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E0CS68_VITVI |
31 |
326 |
330 |
89.69 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42287.1 |
48 |
325 |
325 |
33.23 |
278 |
38 |
4e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G53460.1 |
25 |
310 |
314 |
91.08 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4740 |
Augustus |
mRNA |
11942 |
13799 |
. |
- |
. |
ID=Dca42287.1;Parent=Dca42287 |
| scaffold4740 |
Augustus |
exon |
11942 |
12166 |
. |
- |
. |
ID=Dca42287.1.exon1;Parent=Dca42287.1 |
| scaffold4740 |
Augustus |
exon |
12314 |
12431 |
. |
- |
. |
ID=Dca42287.1.exon2;Parent=Dca42287.1 |
| scaffold4740 |
Augustus |
exon |
13165 |
13799 |
. |
- |
. |
ID=Dca42287.1.exon3;Parent=Dca42287.1 |
