Dca42351.1
Annotation
- 2-exons
- f-1
- sp|Q2QRY8_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass, expressed#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25940#unknown#0F0P0C
- Repeat List (scaffold4757)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42351.1 |
4 |
230 |
236 |
39.83 |
227 |
38 |
3e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRY8_ORYSJ |
654 |
901 |
904 |
27.43 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca42351.1 |
2 |
105 |
236 |
18.64 |
104 |
43 |
1e-21
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1002 |
1105 |
1428 |
7.28 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4757 |
Augustus |
mRNA |
23716 |
24737 |
. |
- |
. |
ID=Dca42351.1;Parent=Dca42351 |
| scaffold4757 |
Augustus |
exon |
23716 |
24106 |
. |
- |
. |
ID=Dca42351.1.exon1;Parent=Dca42351.1 |
| scaffold4757 |
Augustus |
exon |
24418 |
24737 |
. |
- |
. |
ID=Dca42351.1.exon2;Parent=Dca42351.1 |
