Carnation DB

Dca42419.1

Annotation

6-exons
f-1
sp|B9T3Q6_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0038350#unknown#0F0P0C
Os02t0193900-02 Similar to Mediator of RNA polymerase II transcription subunit 18.
Repeat List (scaffold477)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42419.1	1	212	216	82.87	212	85	2e-98
Target_name	Start	End	Length	Cov(%)
sp\|B9T3Q6_RICCO	1	212	217	97.69

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42419.1	1	212	216	75.46	212	77	1e-94
Target_name	Start	End	Length	Cov(%)
AT2G22370.1	3	214	219	96.8

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold477	Augus-PASA	mRNA	39069	41445	.	-	.	ID=Dca42419.1;Parent=Dca42419
scaffold477	Augus-PASA	exon	39069	39080	.	-	.	ID=Dca42419.1.exon1;Parent=Dca42419.1
scaffold477	Augus-PASA	exon	39819	39906	.	-	.	ID=Dca42419.1.exon2;Parent=Dca42419.1
scaffold477	Augus-PASA	exon	39997	40353	.	-	.	ID=Dca42419.1.exon3;Parent=Dca42419.1
scaffold477	Augus-PASA	exon	40447	40504	.	-	.	ID=Dca42419.1.exon4;Parent=Dca42419.1
scaffold477	Augus-PASA	exon	40628	40727	.	-	.	ID=Dca42419.1.exon5;Parent=Dca42419.1
scaffold477	Augus-PASA	exon	41410	41445	.	-	.	ID=Dca42419.1.exon6;Parent=Dca42419.1