Carnation DB

Dca42749.1

Annotation

8-exons
f-1
sp|B9HTN3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_724795#GO:0019898;GO:0009654;GO:0005509;GO:0015979#1F1P2C
sp|B9T155_RICCO#Thylakoid lumenal 25.6 kDa protein, chloroplast, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0190110#GO:0019898;GO:0009654;GO:0005509;GO:0015979#1F1P2C
Repeat List (scaffold482)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42749.1	1	230	240	62.91	230	63	1e-79
Target_name	Start	End	Length	Cov(%)
sp\|B9HTN3_POPTR	1	241	243	99.17

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42749.1	29	229	240	55.83	201	65	6e-75
Target_name	Start	End	Length	Cov(%)
AT3G55330.1	22	228	230	90

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold482	Augus-PASA	mRNA	22441	25153	.	-	.	ID=Dca42749.1;Parent=Dca42749
scaffold482	Augus-PASA	exon	22441	22568	.	-	.	ID=Dca42749.1.exon1;Parent=Dca42749.1
scaffold482	Augus-PASA	exon	22866	22962	.	-	.	ID=Dca42749.1.exon2;Parent=Dca42749.1
scaffold482	Augustus	exon	23218	23289	.	-	.	ID=Dca42749.1.exon3;Parent=Dca42749.1
scaffold482	Augustus	exon	23380	23502	.	-	.	ID=Dca42749.1.exon4;Parent=Dca42749.1
scaffold482	Augustus	exon	23632	23714	.	-	.	ID=Dca42749.1.exon5;Parent=Dca42749.1
scaffold482	Augustus	exon	23940	24020	.	-	.	ID=Dca42749.1.exon6;Parent=Dca42749.1
scaffold482	Augustus	exon	24920	24989	.	-	.	ID=Dca42749.1.exon7;Parent=Dca42749.1
scaffold482	Augustus	exon	25085	25153	.	-	.	ID=Dca42749.1.exon8;Parent=Dca42749.1