Dca43442.1
Annotation
- 3-exons
- f-1
- sp|Q53ND1_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g05840#GO:0005622;GO:0004527;GO:0003676;GO:0008270;GO:0015074#3F1P1C
- Repeat List (scaffold495)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43442.1 |
1 |
400 |
406 |
62.8 |
400 |
52 |
5e-135
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53ND1_ORYSJ |
1042 |
1534 |
2340 |
21.06 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43442.1 |
1 |
394 |
406 |
38.66 |
394 |
32 |
8e-62
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
905 |
1383 |
1401 |
34.18 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold495 |
Augustus |
mRNA |
118457 |
119968 |
. |
- |
. |
ID=Dca43442.1;Parent=Dca43442 |
| scaffold495 |
Augustus |
exon |
118457 |
118673 |
. |
- |
. |
ID=Dca43442.1.exon1;Parent=Dca43442.1 |
| scaffold495 |
Augustus |
exon |
118824 |
119632 |
. |
- |
. |
ID=Dca43442.1.exon2;Parent=Dca43442.1 |
| scaffold495 |
Augustus |
exon |
119774 |
119968 |
. |
- |
. |
ID=Dca43442.1.exon3;Parent=Dca43442.1 |
