Dca43443.1
Annotation
- 2-exons
- f-1
- sp|Q53ND1_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g05840#GO:0005622;GO:0004527;GO:0003676;GO:0008270;GO:0015074#3F1P1C
- Repeat List (scaffold495)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43443.1 |
12 |
309 |
313 |
46.64 |
298 |
49 |
1e-80
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53ND1_ORYSJ |
731 |
1015 |
2340 |
12.17 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43443.1 |
13 |
203 |
313 |
23.32 |
191 |
38 |
9e-40
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
587 |
780 |
1428 |
13.58 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold495 |
Augustus |
mRNA |
120036 |
121081 |
. |
- |
. |
ID=Dca43443.1;Parent=Dca43443 |
| scaffold495 |
Augustus |
exon |
120036 |
120941 |
. |
- |
. |
ID=Dca43443.1.exon1;Parent=Dca43443.1 |
| scaffold495 |
Augustus |
exon |
121046 |
121081 |
. |
- |
. |
ID=Dca43443.1.exon2;Parent=Dca43443.1 |
