Dca43446.1
Annotation
- 3-exons
- f-343
- sp|Q9ZQ67_ARATH#Putative retroelement pol polyprotein#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g14380#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold4950)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43446.1 |
9 |
160 |
176 |
37.5 |
152 |
44 |
4e-33
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9ZQ67_ARATH |
325 |
476 |
764 |
19.89 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43446.1 |
12 |
158 |
176 |
28.97 |
147 |
34 |
3e-19
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0439900-01 |
162 |
312 |
421 |
35.86 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4950 |
Augustus |
mRNA |
2124 |
5936 |
. |
+ |
. |
ID=Dca43446.1;Parent=Dca43446 |
| scaffold4950 |
Augustus |
exon |
2124 |
2193 |
. |
+ |
. |
ID=Dca43446.1.exon1;Parent=Dca43446.1 |
| scaffold4950 |
Augustus |
exon |
3059 |
3122 |
. |
+ |
. |
ID=Dca43446.1.exon2;Parent=Dca43446.1 |
| scaffold4950 |
Augustus |
exon |
5198 |
5936 |
. |
+ |
. |
ID=Dca43446.1.exon3;Parent=Dca43446.1 |
