Carnation DB

Dca43605.1

Annotation

6-exons
f-1
sp|B1N668_SOLLC#Copia LTR rider#Solanum lycopersicum (Tomato) (Lycopersicon esculentum)#ORFNames=LYC_68t000004, SUNLYC_67t000007#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold498)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43605.1	1	180	190	64.73	180	69	1e-69
Target_name	Start	End	Length	Cov(%)
sp\|E0CNX7_VITVI	330	509	523	34.41

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43605.1	1	180	190	61.57	180	65	9e-65
Target_name	Start	End	Length	Cov(%)
Os03t0231800-03	139	318	334	53.89

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold498	Augustus	mRNA	99146	103295	.	-	.	ID=Dca43605.1;Parent=Dca43605
scaffold498	Augustus	exon	99146	99238	.	-	.	ID=Dca43605.1.exon1;Parent=Dca43605.1
scaffold498	Augustus	exon	99371	99649	.	-	.	ID=Dca43605.1.exon2;Parent=Dca43605.1
scaffold498	Augustus	exon	99726	100029	.	-	.	ID=Dca43605.1.exon3;Parent=Dca43605.1
scaffold498	Augustus	exon	100101	100300	.	-	.	ID=Dca43605.1.exon4;Parent=Dca43605.1
scaffold498	Augustus	exon	100391	100564	.	-	.	ID=Dca43605.1.exon5;Parent=Dca43605.1
scaffold498	Augustus	exon	101394	103295	.	-	.	ID=Dca43605.1.exon6;Parent=Dca43605.1