Carnation DB

Dca43808.1

Annotation

7-exons
f-1
sp|D7U470_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_04s0044g00100#GO:0016021#0F0P1C
AT4G16444.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274791-9276056 REVERSE LENGTH=178
Repeat List (scaffold5)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43808.1	61	210	211	45.49	150	64	7e-49
Target_name	Start	End	Length	Cov(%)
sp\|D7U470_VITVI	26	175	176	85.22

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43808.1	61	207	211	39.33	147	57	3e-42
Target_name	Start	End	Length	Cov(%)
AT4G16444.1	28	174	178	82.58

seqname	source	feature	start	end	score	strand	frame	group
scaffold5	Augustus	mRNA	1025913	1029891	.	+	.	ID=Dca43808.1;Parent=Dca43808
scaffold5	Augustus	exon	1025913	1026119	.	+	.	ID=Dca43808.1.exon1;Parent=Dca43808.1
scaffold5	Augus-PASA	exon	1028366	1028448	.	+	.	ID=Dca43808.1.exon2;Parent=Dca43808.1
scaffold5	Augus-PASA	exon	1028935	1029005	.	+	.	ID=Dca43808.1.exon3;Parent=Dca43808.1
scaffold5	Augus-PASA	exon	1029095	1029165	.	+	.	ID=Dca43808.1.exon4;Parent=Dca43808.1
scaffold5	Augus-PASA	exon	1029253	1029334	.	+	.	ID=Dca43808.1.exon5;Parent=Dca43808.1
scaffold5	Augus-PASA	exon	1029593	1029642	.	+	.	ID=Dca43808.1.exon6;Parent=Dca43808.1
scaffold5	Augus-PASA	exon	1029820	1029891	.	+	.	ID=Dca43808.1.exon7;Parent=Dca43808.1