Carnation DB

Dca43821.1

Annotation

5-exons
f-1
sp|A2I5E5_BETVU#Retrotransposon protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold5)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43821.1	98	1607	1634	51.16	1510	54	0
Target_name	Start	End	Length	Cov(%)
sp\|A2I5E5_BETVU	1	1483	1501	98.8

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43821.1	497	1600	1634	24.9	1104	37	0
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	422	1463	1539	67.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5	Augustus	mRNA	1140924	1147740	.	+	.	ID=Dca43821.1;Parent=Dca43821
scaffold5	Augustus	exon	1140924	1141016	.	+	.	ID=Dca43821.1.exon1;Parent=Dca43821.1
scaffold5	Augustus	exon	1141504	1141601	.	+	.	ID=Dca43821.1.exon2;Parent=Dca43821.1
scaffold5	Augustus	exon	1141824	1142579	.	+	.	ID=Dca43821.1.exon3;Parent=Dca43821.1
scaffold5	Augustus	exon	1142670	1146544	.	+	.	ID=Dca43821.1.exon4;Parent=Dca43821.1
scaffold5	Augustus	exon	1147658	1147740	.	+	.	ID=Dca43821.1.exon5;Parent=Dca43821.1