Dca43826.1
Annotation
- 4-exons
- f-1
- sp|B9GKD0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_709269#unknown#0F0P0C
- AT5G41560.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16621427-16622619 REVERSE LENGTH=101
- Repeat List (scaffold50)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43826.1 |
1 |
94 |
98 |
70.4 |
94 |
74 |
6e-36
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9GKD0_POPTR |
1 |
94 |
94 |
100 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca43826.1 |
1 |
94 |
98 |
64.28 |
94 |
68 |
7e-33
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G41560.1 |
1 |
94 |
101 |
93.06 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold50 |
Augustus |
mRNA |
50937 |
52747 |
. |
- |
. |
ID=Dca43826.1;Parent=Dca43826 |
| scaffold50 |
Augustus |
exon |
50937 |
51026 |
. |
- |
. |
ID=Dca43826.1.exon1;Parent=Dca43826.1 |
| scaffold50 |
Augustus |
exon |
51122 |
51183 |
. |
- |
. |
ID=Dca43826.1.exon2;Parent=Dca43826.1 |
| scaffold50 |
Augustus |
exon |
51299 |
51359 |
. |
- |
. |
ID=Dca43826.1.exon3;Parent=Dca43826.1 |
| scaffold50 |
Augustus |
exon |
52664 |
52747 |
. |
- |
. |
ID=Dca43826.1.exon4;Parent=Dca43826.1 |
