Carnation DB

Dca43838.1

Annotation

8-exons
f-1
sp|D7TVD2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_02s0025g01180#GO:0016021;GO:0005743;GO:0005488;GO:0055085#1F1P2C
sp|B9RCP6_RICCO#Grave disease carrier protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1691120#GO:0016021;GO:0005743;GO:0005488;GO:0055085#1F1P2C
Repeat List (scaffold50)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43838.1	1	354	354	83.89	354	84	3e-175
Target_name	Start	End	Length	Cov(%)
sp\|D7TVD2_VITVI	1	354	354	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43838.1	1	354	354	79.94	354	80	5e-168
Target_name	Start	End	Length	Cov(%)
Os05t0585900-01	1	355	356	99.71

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold50	Augus-PASA	mRNA	148338	152936	.	-	.	ID=Dca43838.1;Parent=Dca43838
scaffold50	Augus-PASA	exon	148338	148421	.	-	.	ID=Dca43838.1.exon1;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	148920	149261	.	-	.	ID=Dca43838.1.exon2;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	149759	149872	.	-	.	ID=Dca43838.1.exon3;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	149959	150071	.	-	.	ID=Dca43838.1.exon4;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	150461	150498	.	-	.	ID=Dca43838.1.exon5;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	150832	150995	.	-	.	ID=Dca43838.1.exon6;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	151676	151724	.	-	.	ID=Dca43838.1.exon7;Parent=Dca43838.1
scaffold50	Augus-PASA	exon	152776	152936	.	-	.	ID=Dca43838.1.exon8;Parent=Dca43838.1