Carnation DB

Dca43867.1

Annotation

12-exons
f-1
sp|B9RYT5_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1313180#GO:0005742;GO:0045040#0F1P1C
AT5G41950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16785825-16789360 FORWARD LENGTH=565
Repeat List (scaffold50)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43867.1	41	461	461	70.28	421	77	0
Target_name	Start	End	Length	Cov(%)
sp\|B9RYT5_RICCO	89	505	505	82.57

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca43867.1	16	461	461	66.81	446	69	3e-178
Target_name	Start	End	Length	Cov(%)
AT5G41950.1	116	565	565	79.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold50	Augus-PASA	mRNA	348669	354196	.	-	.	ID=Dca43867.1;Parent=Dca43867
scaffold50	Augus-PASA	exon	348669	348779	.	-	.	ID=Dca43867.1.exon1;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	348926	349114	.	-	.	ID=Dca43867.1.exon2;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	351353	351472	.	-	.	ID=Dca43867.1.exon3;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	351927	351962	.	-	.	ID=Dca43867.1.exon4;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	352406	352534	.	-	.	ID=Dca43867.1.exon5;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	352710	352775	.	-	.	ID=Dca43867.1.exon6;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	352881	352943	.	-	.	ID=Dca43867.1.exon7;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	353084	353113	.	-	.	ID=Dca43867.1.exon8;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	353238	353288	.	-	.	ID=Dca43867.1.exon9;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	353383	353466	.	-	.	ID=Dca43867.1.exon10;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	353561	353858	.	-	.	ID=Dca43867.1.exon11;Parent=Dca43867.1
scaffold50	Augus-PASA	exon	353988	354196	.	-	.	ID=Dca43867.1.exon12;Parent=Dca43867.1