Carnation DB

Dca44501.1

Annotation

6-exons
f-1
sp|G9FIF2_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
sp|Q2QPN0_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g33910#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold5121)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44501.1	420	489	606	6.1	70	53	5e-09
Target_name	Start	End	Length	Cov(%)
sp\|G9FIF2_BETVU	866	933	1553	4.37

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca44501.1	66	425	606	21.61	360	36	9e-59
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	401	765	1539	23.71

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5121	Augustus	mRNA	44010	47726	.	+	.	ID=Dca44501.1;Parent=Dca44501
scaffold5121	Augustus	exon	44010	44636	.	+	.	ID=Dca44501.1.exon1;Parent=Dca44501.1
scaffold5121	Augustus	exon	44730	45365	.	+	.	ID=Dca44501.1.exon2;Parent=Dca44501.1
scaffold5121	Augustus	exon	45664	45786	.	+	.	ID=Dca44501.1.exon3;Parent=Dca44501.1
scaffold5121	Augustus	exon	46999	47088	.	+	.	ID=Dca44501.1.exon4;Parent=Dca44501.1
scaffold5121	Augustus	exon	47177	47262	.	+	.	ID=Dca44501.1.exon5;Parent=Dca44501.1
scaffold5121	Augustus	exon	47468	47726	.	+	.	ID=Dca44501.1.exon6;Parent=Dca44501.1