Dca44654.1
Annotation
- 2-exons
- f-1
- sp|Q2QRQ5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g26760#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- Repeat List (scaffold5153)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca44654.1 |
1 |
258 |
276 |
46.73 |
258 |
50 |
1e-70
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRQ5_ORYSJ |
720 |
980 |
986 |
26.47 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca44654.1 |
96 |
252 |
276 |
23.91 |
157 |
43 |
3e-33
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0627900-01 |
70 |
226 |
230 |
68.26 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5153 |
Augustus |
mRNA |
7025 |
8133 |
. |
+ |
. |
ID=Dca44654.1;Parent=Dca44654 |
| scaffold5153 |
Augustus |
exon |
7025 |
7310 |
. |
+ |
. |
ID=Dca44654.1.exon1;Parent=Dca44654.1 |
| scaffold5153 |
Augustus |
exon |
7589 |
8133 |
. |
+ |
. |
ID=Dca44654.1.exon2;Parent=Dca44654.1 |
