Carnation DB

Dca4518.1

Annotation

6-exons
f-1
sp|B9IMB5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_835945#GO:0005488;GO:0016070#1F1P0C
sp|G7JFK4_MEDTR#Eukaryotic initiation factor iso-4F subunit p82-34#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_4g130570#GO:0003743;GO:0016070#1F1P0C
Repeat List (scaffold117)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4518.1	3	248	248	63.3	246	62	9e-73
Target_name	Start	End	Length	Cov(%)
sp\|B9IMB5_POPTR	4	242	793	30.13

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca4518.1	4	248	248	55.64	245	55	2e-54
Target_name	Start	End	Length	Cov(%)
AT5G57870.1	5	244	780	30.76

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold117	Augus-PASA	mRNA	174448	178029	.	+	.	ID=Dca4518.1;Parent=Dca4518
scaffold117	Augus-PASA	exon	174448	174651	.	+	.	ID=Dca4518.1.exon1;Parent=Dca4518.1
scaffold117	Augus-PASA	exon	176267	176338	.	+	.	ID=Dca4518.1.exon2;Parent=Dca4518.1
scaffold117	Augus-PASA	exon	176478	176573	.	+	.	ID=Dca4518.1.exon3;Parent=Dca4518.1
scaffold117	Augus-PASA	exon	176704	176910	.	+	.	ID=Dca4518.1.exon4;Parent=Dca4518.1
scaffold117	Augus-PASA	exon	177177	177271	.	+	.	ID=Dca4518.1.exon5;Parent=Dca4518.1
scaffold117	Augus-PASA	exon	177957	178029	.	+	.	ID=Dca4518.1.exon6;Parent=Dca4518.1