Carnation DB

Dca45710.1

Annotation

5-exons
f-1
sp|B9IJJ7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_825501#GO:0005840;GO:0003735;GO:0006412#1F1P1C
sp|B9RBL9_RICCO#50S ribosomal protein L13, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1678530#GO:0005840;GO:0003735;GO:0006412#1F1P1C
Repeat List (scaffold539)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45710.1	4	202	203	77.83	199	80	1e-93
Target_name	Start	End	Length	Cov(%)
sp\|B9IJJ7_POPTR	6	204	205	97.07

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca45710.1	7	194	203	71.42	188	78	1e-86
Target_name	Start	End	Length	Cov(%)
AT3G01790.1	10	197	205	91.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold539	Augus-PASA	mRNA	45348	48874	.	-	.	ID=Dca45710.1;Parent=Dca45710
scaffold539	Augus-PASA	exon	45348	45569	.	-	.	ID=Dca45710.1.exon1;Parent=Dca45710.1
scaffold539	Augus-PASA	exon	46052	46163	.	-	.	ID=Dca45710.1.exon2;Parent=Dca45710.1
scaffold539	Augus-PASA	exon	46339	46505	.	-	.	ID=Dca45710.1.exon3;Parent=Dca45710.1
scaffold539	Augus-PASA	exon	48062	48133	.	-	.	ID=Dca45710.1.exon4;Parent=Dca45710.1
scaffold539	Augus-PASA	exon	48836	48874	.	-	.	ID=Dca45710.1.exon5;Parent=Dca45710.1