Dca4686.1
Annotation
- 2-exons
- f-1
- sp|Q10JY5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g29035#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1177)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4686.1 |
64 |
500 |
527 |
49.52 |
437 |
60 |
3e-150
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10JY5_ORYSJ |
350 |
766 |
767 |
54.36 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca4686.1 |
220 |
510 |
527 |
18.02 |
291 |
33 |
9e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1129 |
1409 |
1428 |
19.67 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1177 |
Augustus |
mRNA |
21108 |
23587 |
. |
+ |
. |
ID=Dca4686.1;Parent=Dca4686 |
| scaffold1177 |
Augustus |
exon |
21108 |
21759 |
. |
+ |
. |
ID=Dca4686.1.exon1;Parent=Dca4686.1 |
| scaffold1177 |
Augustus |
exon |
22656 |
23587 |
. |
+ |
. |
ID=Dca4686.1.exon2;Parent=Dca4686.1 |
