Carnation DB

Dca47006.1

Annotation

6-exons
f-1
sp|B9GRT3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_644687#unknown#0F0P0C
AT4G01560.1 | Symbols: MEE49 | Ribosomal RNA processing Brix domain protein | chr4:677266-679164 REVERSE LENGTH=343
Repeat List (scaffold567)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47006.1	43	149	175	46.28	107	60	1e-37
Target_name	Start	End	Length	Cov(%)
sp\|B9GRT3_POPTR	82	216	361	37.39

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47006.1	43	149	175	45.14	107	59	2e-38
Target_name	Start	End	Length	Cov(%)
AT4G01560.1	77	211	343	39.35

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold567	Augustus	mRNA	132156	135842	.	-	.	ID=Dca47006.1;Parent=Dca47006
scaffold567	Augustus	exon	132156	132216	.	-	.	ID=Dca47006.1.exon1;Parent=Dca47006.1
scaffold567	Augustus	exon	132305	132386	.	-	.	ID=Dca47006.1.exon2;Parent=Dca47006.1
scaffold567	Augustus	exon	132527	132596	.	-	.	ID=Dca47006.1.exon3;Parent=Dca47006.1
scaffold567	Augustus	exon	133004	133099	.	-	.	ID=Dca47006.1.exon4;Parent=Dca47006.1
scaffold567	Augustus	exon	133211	133291	.	-	.	ID=Dca47006.1.exon5;Parent=Dca47006.1
scaffold567	Augustus	exon	135705	135842	.	-	.	ID=Dca47006.1.exon6;Parent=Dca47006.1