Dca47027.1
Annotation
- 3-exons
- f-1
- sp|Q7Y1N4_ORYSJ#Putative retrotransposon gag protein#Oryza sativa subsp japonica (Rice)#Name=OSJNBa0053G10.17#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold5677)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47027.1 |
169 |
306 |
426 |
14.08 |
138 |
37 |
2e-21
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7Y1N4_ORYSJ |
426 |
590 |
697 |
23.67 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47027.1 |
171 |
237 |
426 |
5.86 |
67 |
38 |
1e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os09t0122300-01 |
77 |
142 |
150 |
44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5677 |
Augustus |
mRNA |
9700 |
11340 |
. |
+ |
. |
ID=Dca47027.1;Parent=Dca47027 |
| scaffold5677 |
Augustus |
exon |
9700 |
10082 |
. |
+ |
. |
ID=Dca47027.1.exon1;Parent=Dca47027.1 |
| scaffold5677 |
Augustus |
exon |
10240 |
10609 |
. |
+ |
. |
ID=Dca47027.1.exon2;Parent=Dca47027.1 |
| scaffold5677 |
Augustus |
exon |
10813 |
11340 |
. |
+ |
. |
ID=Dca47027.1.exon3;Parent=Dca47027.1 |
