Dca47076.1
Annotation
- 3-exons
- f-1
- sp|Q7XEF2_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g28930#GO:0005634;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P1C
- Repeat List (scaffold5688)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47076.1 |
38 |
793 |
799 |
42.55 |
756 |
41 |
2e-167
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7XEF2_ORYSJ |
27 |
850 |
1470 |
56.05 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47076.1 |
387 |
793 |
799 |
21.52 |
407 |
37 |
1e-79
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
430 |
893 |
1539 |
30.14 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5688 |
Augustus |
mRNA |
4261 |
6915 |
. |
- |
. |
ID=Dca47076.1;Parent=Dca47076 |
| scaffold5688 |
Augustus |
exon |
4261 |
4623 |
. |
- |
. |
ID=Dca47076.1.exon1;Parent=Dca47076.1 |
| scaffold5688 |
Augustus |
exon |
4756 |
5271 |
. |
- |
. |
ID=Dca47076.1.exon2;Parent=Dca47076.1 |
| scaffold5688 |
Augustus |
exon |
5395 |
6915 |
. |
- |
. |
ID=Dca47076.1.exon3;Parent=Dca47076.1 |
