Dca47245.1
Annotation
- 2-exons
- f-1
- sp|Q33AJ4_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g09610#GO:0003723;GO:0003964;GO:0008270;GO:0006278#3F1P0C
- Repeat List (scaffold572)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47245.1 |
12 |
235 |
241 |
34.02 |
224 |
35 |
3e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q33AJ4_ORYSJ |
872 |
1100 |
1853 |
12.35 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47245.1 |
47 |
229 |
241 |
25.72 |
183 |
34 |
3e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os06t0484800-00 |
309 |
478 |
857 |
19.83 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold572 |
Augustus |
mRNA |
103778 |
106527 |
. |
+ |
. |
ID=Dca47245.1;Parent=Dca47245 |
| scaffold572 |
Augustus |
exon |
103778 |
103847 |
. |
+ |
. |
ID=Dca47245.1.exon1;Parent=Dca47245.1 |
| scaffold572 |
Augustus |
exon |
105872 |
106527 |
. |
+ |
. |
ID=Dca47245.1.exon2;Parent=Dca47245.1 |
